It has been reported that altered dopaminergic neurotransmission may contribute to the development of aggressive behaviors and emotional intelligence (EI) impairment. However, less is known about the impact of polymorphisms in dopaminergic genes on the level of aggression and EI. Therefore, we aimed to investigate the association between the catechol-O-methyltransferase (COMT) rs6277 gene polymorphism and the dopamine 2 receptor (DRD2) rs4680 gene polymorphism as well as the level of aggression and EI in adolescents with conduct disorder. Participants were 144 adolescents with conduct disorder recruited at the youth sociotherapy centre. The Buss-Perry Aggression Questionnaire (BPAQ) was administered to record the level of aggression while the Popular Emotional Intelligence Questionnaire (PEIQ) and the Schutte Self-Report Inventory (SSRI) were used to assess EI. We found no significant associations between selected polymorphisms and the scores of BPAQ, PEIQ and SSRI. Our findings do not support the role of the COMT and the DRD2 gene polymorphisms in shaping aggressive behaviors and EI in adolescents with conduct disorder. Longitudinal studies on larger populations are needed to confirm these results.